Reports and articles

30/06/2020 – Evaluating qPCR cycle threshold (Ct) as a predictive value of sequencing quality (READ ONLINE)
30/10/2020 – REPORT: ‘A genomic perspective of the pandemic: lessons in public health’ (PDF DOWNLOAD, Spanish languaje)

29/03/2021- “Actuaciones sobre la enfermedad y conexión con la clínica”. Pages 35-71 from the book “Una visión global de la pandemia COVID-19: qué sabemos y qué estamos investigando desde el CSIC“. ISBN: 978-84-00-10779-6. 2021 March 29. Editorial CSIC. (PDF AVAILABLE, Spanish languaje)

Articles

  • López MG, Chiner-Oms Á, García de Viedma D, Ruiz-Rodriguez P, Bracho MA, Cancino-Munoz I, D’Auria G, de Marco G, Garcia-Gonzalez N, Goig GA, Gomez-Navarro I, Jiménez-Serrano S, Martinez-Priego L, Ruiz-Hueso P, Ruiz-Roldan L, Torres-Puente M, Alberola J, Albert E, Aranzamendi Zaldumbide M, Bea-Escudero MP, Boga JA, Bordoy AE, Canut A, Carvajal A, Cilla Eguiluz G, Cordón Rodríguez ML, Costa-Alcalde JJ, de Toro M, de Toro Peinado I, del Pozo JL, Duchene S, Fernández-Pinero J, Fuster Escrivá B, Gimeno Cardona C, González Galán V, Gonzalo Jimeno N, Hernáez Crespo S, Herranz M, Lepe JA, Lopez-Hontangas JL, Marcos MA, Martin V, Martro E, Milagro Beamonte A, Montes Ros M, Moreno-Munoz R, Navarro D, Navarro-Mari JM, Not A, Oliver A, Palop-Borras B, Parra Grande M, Pedrosa-Corral I, Pérez González MC, Perez-Lago L, Piñeiro Vázquez L, Rabella N, Reina J, Rezusta A, Robles Fonseca L, Rodríguez-Villodres A, Sanbonmatsu-Gámez S, Sicilia J, Tirado Balaguer MD, Torres I, Tristancho A, Marimón JM, Coscolla M, González-Candelas F, Comas I. The first wave of the Spanish COVID-19 epidemic was associated with early introductions and fast spread of a dominating genetic variant. Nature Genetics. In press
  • Ruiz-Rodriguez P, Francés-Gómez C, Chiner-Oms Á, López MG, Jiménez-Serrano S, Cancino-Muñoz I, Ruiz-Hueso P, Torres-Puente M, Bracho MA, D’Auria G, Martinez-Priego L, Guerreiro M, Montero-Alonso M, Gómez MD, Piñana JL, SeqCOVID-SPAIN consortium, González-Candelas F, Comas I, Marina A, Geller R, Coscolla M. Evolutionary and phenotypic characterization of spike mutations in a new SARS-CoV-2 Lineage reveals two Variants of Interest. medRxiv.
  • González-Candelas F, Shaw MA, Phan T, Kulkarni-Kale U, Paraskevis D, Luciani F, Kimura H, Sironi M. One year into the pandemic: Short-term evolution of SARS-CoV-2 and emergence of new lineages. Infection, Genetics and Evolution. 2021. 92: 104869. https://doi.org/10.1016/j.meegid.2021.104869

Colaborations

  • Pérez-Lago L, Aldámiz-Echevarría T, García-Martínez R, Pérez-Latorre L, Herranz M, Sola-Campoy PJ, Suárez-González J, Martínez-Laperche C, Comas I, González-Candelas F, Catalán P, Muñoz P, García de Viedma D. Different within-host viral evolution dynamics in severely immunosuppressed cases with persistent SARS-CoV-2. Biomedicines. 2021; 9 (7): 808
  • Pérez-Lago L, Martínez Lozano H, Pajares Díaz JA, Díaz Gómez A, Machado M, Sola-Campoy PJ, Herranz M, Buenestado-Serrano S, Valerio M, Olmedo M, Andrés Zayas C, Comas I, González-Candelas F, Bañares R, Catalán P, Muñoz P, García de Viedma D, Gregorio Marañón Microbiology-ID COVID. Proper assignation of reactivation in a COVID-19 recurrence initially interpreted as a reinfection. Journal of Infectious Diseases. 2021; 224 (5): 788-792
  • Pérez-Lago L, Sola Campoy PJ, Buenestado-Serrano S, Catalán P, Estévez A, de la Cueva VM, López MG, Herranz M, Suárez-González J, Alcalá L, Comas I, González-Candelas F, Muñoz P, García de Viedma D. Epidemiological, clinical and genomic snapshot of the first 100 B.1.1.7 SARS-CoV-2 cases in Madrid. Journal of Travel Medicine. 2021 Mar 24; taab044, doi: https://doi.org/10.1093/jtm/taab044
  • Pérez Cataluña A, Chiner-Oms Á, Cuevas Ferrando E, Díaz-Reolid A, Falcó I, Randazzo W, Girón-Guzmán I, Allende A, Bracho MA, Comas I, Sánchez Moragas G. Detection of genomic variants of SARS-CoV-2 circulating in wastewater by high-throughput sequencing. medRxiv.
  • Pérez-Lago L, Pérez Latorre L, Herranz M, Tejerina F, Sola-Campoy PJ, Sicilia J, Suárez González J, Andrés Zayas C, Chiner-Oms Á, Jiménez-Serrano S, García-González N, Comas I, González-Candelas F, Martínez-Laperche C, Catalán P, Muñoz P, García de Viedma D. A complete analysis of the epidemiological scenario around a SARS-CoV-2 reinfection: previous infection events and subsequent transmission. Research Square.
  • Hodcroft EB, Zuber M, Nadeau S, Vaughan TG, Crawford KHD, Althaus CL, Reichmuth ML, Bowen JE, Walls AC, Corti D, Bloom JD, Veesler D, Mateo D, Hernando A, Comas I, González Candelas F, SeqCOVID-SPAIN consortium, Stadler T, Neher RA. Spread of a SARS-CoV-2 variant through Europe in the summer of 2020. Nature. 2021; 595: 707-712
  • Alm E, Broberg EK, Connor T, Hodcroft EB, Komissarov AB, Maurer-Stroh S, Melidou A, Neher RA, O’Toole A, Pereyaslov D, The WHO European Region sequencing laboratories and GISAID EpiCoV group. Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020. EuroSurveillance. 2020;25(32):pii=2001410.